The International Society for the Study of Vascular Anomalies (ISSVA) ontology

The International Society for the Study of Vascular Anomalies (ISSVA) provides a classification for vascular anomalies that enables specialists to unambiguously classify diagnoses. This classification is only available in PDF format and is not machine-readable, nor does it provide unique identifiers that allow for structured registration. In this paper, we describe the process of transforming the ISSVA classification into an ontology. We also describe the structure of this ontology, as well as two applications of the ontology using examples from the domain of rare disease research. We used the expertise of an ontology expert and clinician during the development process. We semi-automatically added mappings to relevant external ontologies using automated ontology matching systems and manual assessment by experts. The ISSVA ontology should contribute to making data for vascular anomaly research more Findable, Accessible, Interoperable, and Reusable (FAIR). The ontology is available at https://bioportal.bioontology.org/ontologies/ISSVA.     

Acoustic emission analysis using Bayesian model selection for damage characterization in ceramic matrix composites

Acoustic emission (AE) during tensile testing of three-dimensional woven SiC/SiC composites was analyzed by a statistical modeling method based on a Bayesian approach to quantitatively evaluate the fracture process. Gaussian mixture models and Weibull mixture models were utilized as candidate models describing the AE time-series data. After fitting AE time-series data to these models with Markov Chain Monte Carlo (MCMC) methods, the model selection was conducted by stochastic complexity. Among the candidate models, the two-component Weibull mixture model was automatically selected. It was confirmed that the component distributions in the two-component Weibull mixture model were corresponding to the evolution of matrix cracking and fiber breakage, respectively. Since the proposed AE analysis method can determine the number of component distributions without the decision of researchers and inspectors, it is expected to be useful for an understanding of the fracture process in newly developed materials and the reliability assessment in service.     

A review of topic modeling methods

Topic modeling is a popular analytical tool for evaluating data. Numerous methods of topic modeling have been developed which consider many kinds of relationships and restrictions within datasets; however, these methods are not frequently employed. Instead many researchers gravitate to Latent Dirichlet Analysis, which although flexible and adaptive, is not always suited for modeling more complex data relationships. We present different topic modeling approaches capable of dealing with correlation between topics, the changes of topics over time, as well as the ability to handle short texts such as encountered in social media or sparse text data. We also briefly review the algorithms which are used to optimize and infer parameters in topic modeling, which is essential to producing meaningful results regardless of method. We believe this review will encourage more diversity when performing topic modeling and help determine what topic modeling method best suits the user needs.     

A self-adaptive synthetic over-sampling technique for imbalanced classification

Traditionally, in supervised machine learning, (a significant) part of the available data (usually 50%-80%) is used for training and the rest—for validation. In many problems, however, the data are highly imbalanced in regard to different classes or does not have good coverage of the feasible data space which, in turn, creates problems in validation and usage phase. In this paper, we propose a technique for synthesizing feasible and likely data to help balance the classes as well as to boost the performance in terms of confusion matrix as well as overall. The idea, in a nutshell, is to synthesize data samples in close vicinity to the actual data samples specifically for the less represented (minority) classes. This has also implications to the so-called fairness of machine learning. In this paper, we propose a specific method for synthesizing data in a way to balance the classes and boost the performance, especially of the minority classes. It is generic and can be applied to different base algorithms, for example, support vector machines, k-nearest neighbour classifiers deep neural, rule-based classifiers, decision trees, and so forth. The results demonstrated that (a) a significantly more balanced (and fair) classification results can be achieved and (b) that the overall performance as well as the performance per class measured by confusion matrix can be boosted. In addition, this approach can be very valuable for the cases when the number of actual available labelled data is small which itself is one of the problems of the contemporary machine learning.     

An automated patient monitoring using discrete‐time wireless sensor networks

In recent years, Internet of Things (IoT) devices are used for remote health monitoring. For remotely monitoring a patient, only the health information at different time points are not sufficient; predicted values of biomarkers (for some future time points) are also important. In this article, we propose a powerful statistical model for an efficient dynamic patient monitoring using wireless sensor nodes through Bayesian Learning (BL). We consider the setting where a set of correlated biomarkers are measured from a patient through wireless sensors, but the sensors only report the ordinal outcomes (say, good, fair, high, or very high) to the sink based on some prefixed thresholds. The challenge is to use the ordinal outcomes for monitoring and predicting the health status of the patient under consideration. We propose a linear mixed model where interbiomarker correlations and intrabiomarker dependence are modeled simultaneously. The estimated and the predicted values of the biomarkers are transferred over the internet so that health care providers and the family members of the patient can remotely monitor the patient. Extensive simulation studies are performed to assess practical usefulness of our proposed joint model, and the performance of the proposed joint model is compared to that of some other traditional models used in the literature.     

油藏开发地质勘探的常见问题分析

就油藏开发地质勘探的常见问题进行分析,从油藏开发的分类、油藏开发程序以及油藏储量计算等方面综合考虑影响油藏开发的因素,为现实油藏开发工程提供理论依据,提升油藏开发技术水准。     

TCBR-HMM: An HMM-based text classifier with a CBR system

This paper presents an innovative solution to model distributed adaptive systems in biomedical environments. We present an original TCBR-HMM (Text Case Based Reasoning-Hidden Markov Model) for biomedical text classification based on document content. The main goal is to propose a more effective classifier than current methods in this environment where the model needs to be adapted to new documents in an iterative learning frame. To demonstrate its achievement, we include a set of experiments, which have been performed on OSHUMED corpus. Our classifier is compared with Naive Bayes and SVM techniques, commonly used in text classification tasks. The results suggest that the TCBR-HMM Model is indeed more suitable for document classification. The model is empirically and statistically comparable to the SVM classifier and outperforms it in terms of time efficiency.